Currently: * Western pygmy marmoset (Cebuella pygmaea) - Batu Secret Zoo * Silvery marmoset (Mico argentatus) - Faunaland * Common marmoset (Callithrix jacchus) - Siantar Zoo, Cikao Park Purwakarta, and Batu Secret Zoo * Black-tufted marmoset (Callithrix penicillata) - Batu Secret Zoo * White-headed marmoset (Callithrix geoffroyi) - Batu Secret Zoo * White-lipped tamarin (Saguinus labiatus) - Batu Secret Zoo * Red-handed tamarin (Saguinus midas) - Cikao Park Purwakarta and Batu Secret Zoo * Cotton-top tamarin (Saguinus oedipus) - Jakarta Aquarium, Cikao Park Purwakarta, and Batu Secret Zoo * Golden-headed lion tamarin (Leontopithecus chrysomelas) - Siantar Zoo and Batu Secret Zoo * Guianan squirrel monkey (Saimiri sciureus) - Batu Secret Zoo * Tufted capuchin (Sapajus apella) - Ragunan Zoo and Batu Secret Zoo * Giant otter (Pteronura brasiliensis) - Batu Secret Zoo * South American coati (Nasua nasua) - Batu Secret Zoo * Capybara (Hydrochoerus hydrochaeris) - Ragunan Zoo and Taman Safari Bogor * Patagonian mara (Dolichotis patagonum) - Lembah Hijau Zoo, Royal Safari Garden, and Batu Secret Zoo * South American tapir (Tapirus terrestris) - Gembira Loka Zoo and Maharani Zoo * Giant anteater (Myrmecophaga tridactyla) - Batu Secret Zoo * Cougar (Puma concolor) - Taman Safari Bogor and Batu Secret Zoo * Jaguar (Panthera onca) - Taman Safari Bogor and Batu Secret Zoo * South American fur seal (Arctocephalus australis) - Ocean Dream Samudra and Predator Fun Park * South American sea lion (Otaria flavescens) - Ocean Dream Samudra and Batu Secret Zoo Formerly: * Golden lion tamarin (Leontopithecus rosalia) - Royal Safari Garden * Southern three-banded armadillo (Tolypeutes matacus) - Taman Safari Prigen * Chacoan mara (Dolichotis salinicola) - Batu Secret Zoo * Guanaco (Lama guanicoe) - Bandung Zoological Garden * Maned wolf (Chrysocyon brachyurus) - Taman Safari Prigen * False killer whale (Pseudorca crassidens) - Ocean Dream Samudra Privately owned: * Long-tailed chinchilla (Chinchilla lanigera) * Brazilian porcupine (Coendou prehensilis) * Kinkajou (Potos flavus) * Ocelot (Leopardus pardalis) Let me know if I missed any species or zoos that currently/formerly keep the species.
Yes, they keep a pair. I was originally going to include the kinkajou to the formerly list, until I remember that Rico just acquired a pair of kinkajou.
Also Taman Legenda TMII kept some Alpacas. A factory outlet in Cihampelas called Cihampelas Point (Cipo) used to keep some Short-tailed chinchillas, until the outlet closed in 2014.